Capillary GC Column Manufacture—A Troubleshooting Insight

ColumnDecember 2023
Volume 19
Issue 12
Pages: 21–26

Manufacturing capillary gas chromatography (GC) columns is a very complex procedure, with many production factors to consider. In this LCGC Blog, Tony Taylor lists some of the vital components of the GC column making process.

After having recently written about how to kill your gas chromatography (GC) column (1), I wanted to “flip” the situation and explain a little about how wall coated open tubular (WCOT) capillary GC columns are manufactured. Figure 1 presents a typical cross-section of a WCOT column, showing the fused silica tubing with its polyimide coating and internally coated film of stationary phase.

I’ve always believed that by gaining an insight into the manufacture of the columns we use daily for GC applications, we can reach a deeper understanding of analytical problems as they occur.

The length of the list below indicates just how complex GC column manufacturing can be; steps 2–13 alone typically take between 10 and 12 days to complete.

  1. Fused silica tubing manufacture
  2. Winding onto column cage
  3. Tubing preparation
  4. Tubing leaching
  5. Tubing deactivation
  6. Filling with dissolved stationary phase or monomers
  7. Coating
  8. Cross-linking
  9. Rinsing
  10. Curing
  11. Special treatments
  12. Curing
  13. Quality control testing

Let’s look at some of the steps in more detail and explore possible implications to problems with the column in use. With this, we can pick up some troubleshooting hints related to the manufacture of the world’s most used chromatography columns.

Fused Silica Tubing Manufacture

Figure 2 shows a typical manufacturing process for the slow draw/low tension process of fused silica capillaries (2). It should be noted that an even more complex process is used for fast draw/high tension processes.

Synthetic fused silica rods are fed into a 2000 ºC graphite furnace (often 10 m above the production floor), which is gas-shielded. The silica melts under precise heating conditions and is “drawn” by a capstan, which is many metres away on the factory floor. The drawing speed and tension are very closely controlled, as these parameters dictate the uniformity of the tubing’s outer and inner diameters. These parameters are also closely monitored by laser micrometers positioned within the drawing rig, which are connected to the capstan so that draw speed may be adjusted to maintain the capillary diameter within specification tolerance. Available data show that silica capillary manufacturers can control within around 4% of the nominal internal diameter, which, for a 0.53 mm capillary, would be 0.508–0.554 mm. This may not seem significant, but it equates to approximately a 10% variation in the optimum linear carrier gas velocity or 20% in column volume for capillaries of nominally the same length.

Along the drawing path, several coating baths apply successive layers of polyamic acid solution, which are subsequently cured to build the yellow/brown outer coating we are all familiar with; this imparts mechanical strength, protection from abrasive damage, and flexibility to the capillary. A single “draw” operation can produce as much as 15 km of capillary with 0.25 mm internal diameter at speeds between 3 and 40 m per minute.

Improper or poorly cured polyimide layers can lead to issues with the quality of column cuts. Under-cured polyimide is relatively soft and does not yield easily to most tools used for cutting capillary columns. Clean cuts (defined as cuts at approximately 90° to the column axis with only minor protrusions or voids of glass or polymer and no silica chip formation) are quite difficult to achieve with poorly cured polyimides. Such “ragged” column cuts can lead to issues such as peak tailing and/or splitting; chips of silica may fall inside the column, leading to irreparable damage of the stationary phase and exposure of the underlying silica, which will typically give tailing peaks with more polar analytes.

To reduce the level of surface activity within the drawn capillary tubing, it is possible to complete the drawing process with the inner surface of the capillary under an inert gas atmosphere, which reduces the level of acids of nitrogen forming on the inner surface. When combined with residual or atmospheric water, as shown in Figure 3, the silica will hydrolyze to active silanol groups (2). Controlling the level and homogeneity of any residual surface silanol species is important for the next phase of capillary column production.

The leaching process typically involves an acid wash, which can help to remove impurities such as chlorine, acids of nitrogen, and other sources of catalytic activity such as metal ions. All of these can ultimately give rise to active sites, which will cause peak tailing with more polar analytes.

Next, the inner surface is hydrolyzed to maximize the concentration of surface silanol species. Whilst this may seem counter-intuitive, as silanol species cause peak tailing with polar analytes, it does ensure that further hydrolysis post-stationary phase deposition is less likely, and that the silanol concentration is normalized from batch to batch.

Leaching and Deactivation

The next stage in the production process is to block or deactivate the surface silanol species using purified and well-characterized reagents. Impurities in the deactivation reagent may lead to problems with the column coating, and changes in the composition of the deactivation reagent(s) can lead to batch-to-batch variation in the stationary phase bleed profile. Reagents such as organochlorosilanes, alkoxysilanes, hexamethyldisilazine, or other reactive compounds are used for the chemical deactivation process. The reagents and reaction conditions used tend to be proprietary to manufacturers, and the variation in deactivation chemistry are often responsible for the differences in column performance between manufacturers. Deactivation chemistry can also be “tuned” for various classes of problematic analyte and the resulting phases are designated as “optimized” for a named application.

Finally, in this stage of production, further treatments may be added to optimize the “wettability” of the surface to less polar or more polar stationary phase polymers. This helps to ensure a uniform stationary phase deposition and, hence, optimized column efficiency. The column is then washed with a pure solvent and dried under an inert atmosphere.

Coating, Cross-Linking, and Curing

The next stage in the process is coating and cross-linking, which is critical to ensure good chromatographic resolution and reproducibility. It is important to carefully control phase (film) thickness and homogeneity. Most modern columns are cross-linked to bind them tightly to the inner wall of the column, adding thermal stability, lowering activity, and giving the ability to solvent wash the column if required.

The purity and chemistry of the polymer used to coat the column is of utmost importance. Good manufacturers will synthesize, purify, and test the polymers in-house prior to coating, to ensure quality and reproducibility. Small variations in the ratio of the monomers within the polymer can cause large relative retention shifts, so manufacturers will check each batch of polymer using the retention indices of test mixes. They may also remove lower molecular weight fractions of the polymer to reduce column bleed to acceptable levels. Again, column bleed may be tested on a small number of columns prior to the polymer batch being accepted for large-scale manufacture.

Once the polymer has been demonstrated to be fit for purpose, it is dissolved in a suitable (usually proprietary and optimized) solvent mix at a concentration that will ultimately determine the stationary phase film thickness.

Most modern WCOT capillary GC columns are coated using a “static coating” process in which the entire column is filled with the stationary phase solution, one end carefully sealed, and the other end connected to a vacuum pump. As seen in Figure 4, the column is held at a constant and optimized temperature—typically using a water bath—and the volatile solvent evaporates back towards to the plugged end of the column (3).

The level of vacuum applied and the temperature must be precisely controlled to achieve the correct rate of evaporation of the solvent to avoid “bumping” of the stationary phase, which results in a non-homogenous deposition of the stationary phase and poor efficiency. The temperature of the column is typically controlled via immersion into a water batch, which is shown in Figure 5. A “bumped” GC stationary phase is shown in Figure 6 where “gaps” or “bubbles” within the stationary phase can be seen as the lighter regions highlighted in the figure.

For columns that require higher thermal stability, the polymeric molecular weight and degree of cross-linking need to be considerably higher, and the polymer has gum-like physical properties; consequently, the production of a useable polymer “solution” may not be possible. In this case, oligomers (or other precursors of the final polymer) and polymerization initiators are coated onto the capillary wall. The polymerization reaction can then be performed in situ either before or after solvent evaporation, in an oxygen-free environment. These “cross-linking” processes are highly proprietary, as they are, in part, responsible for the thermal and chemical stability of the stationary phase, effectively immobilizing the coated polymer onto the inner wall of the capillary column. These processes are the “secret sauce” of the column manufacturer, and almost nothing is available online or in patents regarding cross-linking or immobilization chemistry.

As mentioned above, when using the static coating technique, the film thickness of the stationary phase is controlled using the concentration of the polymer or monomers/oligomers used to coat the inner wall of the capillary. The phase ratio (β) of the column is the ratio of the volume of stationary phase to the amount of carrier gas within the capillary, and this is a critical parameter to ensure reproducible analyte retention time from different batches of columns.

VM is the volume of mobile phase, VS is the volume of the stationary phase, r is the radius in micrometres, and df is the stationary phase film thickness.

This goes some way to explaining why the variations in capillary inner diameter are so important and how any unexpected variance in the column inner diameter (2d in equation 1) may cause variation in the phase ratio if the polymer concentration, and therefore the film thickness, used to coat the column is constant. Therefore, to avoid batch-to-batch variability, manufacturers may measure the external and internal diameters of the capillary column and make small adjustments to the polymer concentration to maintain a constant phase ratio on a batch-to-batch basis. This should ensure that the pressure applied by the electronic pressure control of the GC process does not have to be altered to obtain the same analyte retention time after changing to a new column of the same stationary phase and physical dimensions. However, no matter how diligent the manufacturer, it is almost impossible to obtain an exact phase ratio throughout the entire length of the capillary column—that is to say, the ratio of column internal diameter to coating film thickness may subtly vary along the length of the column. This is the reason why if one cuts a 60 m GC column exactly in half, retention times from each of the two resulting 30 m columns may vary!

Following the application of the stationary phase and any cross-linking, any unreacted polymer or impurities are removed from the column through solvent rinsing using the appropriate solvents.

After drying in an inert atmosphere, the column may be heated (cured) prior to any final “special treatments”, which are primarily chemical modifications of the stationary phase or underlying silica surface. These treatments may, again, modify the stationary phase to perform particularly well with certain analyte classes. The modification chemistry may be performed using gas phase or vapour deposition techniques.

The column is then heated (cured) by gently raising the column temperature in an oven containing an inert gas, up to its maximum operating temperature. This will expel any remaining by-products and impurities from the column, but this “bleed” will quickly reduce to a level that represents the bleed profile of the new column. It should be noted that WCOT GC columns bleed all the time, but these modern manufacturing techniques and treatments ensure that we have extremely low levels of underlying bleed for our analyses. The columns will continue to produce low levels of bleed if we are diligent in excluding oxygen, moisture, and contaminants from the column during routine use, typically by using high-quality carrier gases and using gas filters.

Quality Control (QC) Testing

Finally, the columns are QC tested by manufacturers, who choose test mixes that contain analytes to act as probes for the phase chemistry under test, or the specific application for which the column will be used. The probes are typically chosen to highlight any issues with retention, selectivity, efficiency, and peak shape, exploring the phase chemistry, phase ratio, phase bleed, and the deactivation chemistry of the stationary phase. Some manufacturers will test each individual column whilst others may test only a selection of columns from a particular batch. Typically, the test chromatograms will be obtained under isothermal conditions, which tend to reveal more about test probe peak shape and efficiency than temperature-programmed operation, where peaks are sharpened because of thermal focusing and lower column residence times. Manufacturers will have their own internal test specifications, which may be more stringent than the specifications provided within their sales literature.

I hope that this has given you some insights into the complexity of GC column manufacturing and the care with which manufacturers take to produce a column that will perform to our exacting standards out of the box. I also hope that this information helps with your future troubleshooting efforts.


(1) The LCGC Blog, GC Column Killers! (accessed 2023-05-14).

(2) Griffin, S. Fused-Silica Capillary—The Story Behind the Technology. LCGC N. Am. 2002, 20 (10), 928–936.

(3) Majors, R; Decker, D.; Vickers, A. K. The Art and Science of GC Capillary Column Production. LCGC N. Am. 2007, 25 (7), 616–631.

Tony Taylor is chief scientific officer of Element Materials Technology and technical director of CHROMacademy. His background is in pharmaceutical R&D and polymer chemistry, but he has spent the past 20 years in training and consulting, working with clients to ensure they attain the very best analytical science possible. He has trained and consulted with thousands of analytical chemists globally and is passionate about professional development in separation science, developing CHROMacademy to provide high-quality online education to analytical chemists. His current research interests include HPLC column selectivity codification, advanced automated sample preparation, and LC–MS and GC–MS for materials characterization, especially in the field of extractables and leachables analysis.

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